Search results for "Protein database"

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Overlap and diversity in antimicrobial peptide databases: Compiling a non-redundant set of sequences

2015

Abstract Motivation: The large variety of antimicrobial peptide (AMP) databases developed to date are characterized by a substantial overlap of data and similarity of sequences. Our goals are to analyze the levels of redundancy for all available AMP databases and use this information to build a new non-redundant sequence database. For this purpose, a new software tool is introduced. Results: A comparative study of 25 AMP databases reveals the overlap and diversity among them and the internal diversity within each database. The overlap analysis shows that only one database (Peptaibol) contains exclusive data, not present in any other, whereas all sequences in the LAMP_Patent database are inc…

Statistics and ProbabilitySimilarity (geometry)Computer scienceSequence analysisAntimicrobial peptidesPeptaibolPeptidecomputer.software_genreProceduresBiochemistrySet (abstract data type)chemistry.chemical_compoundProtein methodsSequence Analysis ProteinRedundancy (engineering)HumansDatabases ProteinMolecular BiologyAntimicrobial cationic peptideschemistry.chemical_classificationSequenceAntimicrobial cationic peptideDatabaseSequence databaseSequence analysisComputer Science ApplicationsAlgorithmComputational MathematicsChemistryProtein databaseComputational Theory and MathematicschemistryData miningNucleic acid databaseDatabases Nucleic AcidcomputerSoftwareAlgorithmsHuman
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